PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233127.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 698aa    MW: 77442.5 Da    PI: 6.787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233127.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_008233127.1 127 FCKILTASDTSTHGGFSVLRKHATEClppldMIQATPTQELNAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNG 219
                     99****************************9556666679************************************************..34899 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_008233127.1 220 ELRVGVRR 227
                     99****98 PP
2Auxin_resp101.98e-34253332183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+e+s+err++Gt+vgv dl++ +W++SkWrsLk
  XP_008233127.1 253 ASHALMTRTLFVVYYKPRT--SQFIIGLNKYLEAINNKFSVGMRFKMRFEGEESPERRFTGTIVGVGDLSS-QWSESKWRSLK 332
                     6899**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.19E-40116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-39120242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-20125227No hitNo description
PfamPF023622.2E-21127227IPR003340B3 DNA binding domain
SMARTSM010198.8E-22127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815127229IPR003340B3 DNA binding domain
PfamPF065078.2E-32253332IPR010525Auxin response factor
PfamPF023091.2E-6573621IPR033389AUX/IAA domain
SuperFamilySSF542775.89E-11580661No hitNo description
PROSITE profilePS5174522.263585666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HLEQLEASTN  60
QELNQQIPLF NLPFKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCIPEPS  120
KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSHMPSSVI  240
SSQSMHLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE  300
GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPERVSPW EIEPFVASAP  360
IHLAQPVVKS KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV  420
WPLRQKESNS SSYSSSRVYS EGIWPSSPCV NVSLSLFPDS KEGNKNVTTG SVLSSVASPV  480
SSKASSKPSN TPIPGQVGKE KKSDSSDLWL FGYNLTNNSK TASPPESEPV CKAMSCGGKG  540
SITAAAFEVD QDLDVSKLSK EQKQVISEAS PGETQGKQGL TLSTRTRTKV QMQGVAVGRA  600
VDLTSLKGYD NLIDELEKMF EIKGELRPQN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK  660
IFIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1742235519355Auxin response factor 1
4ldw_A1e-1742235519355Auxin response factor 1
4ldw_B1e-1742235519355Auxin response factor 1
4ldx_A1e-1742235519355Auxin response factor 1
4ldx_B1e-1742235519355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233127.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A2L1GH240.0A0A2L1GH24_9ROSA; Auxin response factor
STRINGXP_008233127.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]