PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233130.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 202aa    MW: 22611.9 Da    PI: 6.3674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233130.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-183787155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  XP_008233130.1 37 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 87
                    68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-123787IPR001471AP2/ERF domain
PROSITE profilePS5103223.3143895IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213896IPR016177DNA-binding domain
SMARTSM003803.2E-3638101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-313896IPR001471AP2/ERF domain
PRINTSPR003671.4E-123950IPR001471AP2/ERF domain
CDDcd000181.20E-293997No hitNo description
PRINTSPR003671.4E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEMEQTPYTE DDRSTTSTST TTTTQKSDSQ HAATRHPVYR GVRKRRWGKW VSEIREPRKK  60
SRIWLGSFPV PEMAAKAYDV AAYCLKGQKA QLNFPEDVEH LPRPSTCTAR DIQAAAAKAA  120
HTMKSNSTTP KENDHHHHHH DHDGLDGDDD FWGEIELPEL MNSGCHWNSS CGWNPTASSG  180
DAAAWPEGEA PQQFIGMVLV SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1736951272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695480.0KT369548.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233130.11e-152PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI23e-60ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A251QLB81e-111A0A251QLB8_PRUPE; Uncharacterized protein
STRINGXP_008233130.11e-151(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]