PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233131.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 602aa    MW: 66065.9 Da    PI: 6.0605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233131.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13431477455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_008233131.1 431 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 477
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5353241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-18430491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-15430481No hitNo description
Gene3DG3DSA:4.10.280.104.5E-18431490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKIEMGLGGG VWNDGDKAMV AAVLGTRAFD YLISSSVSSN ENSCMGIGTD ENLHNKLSDL  60
VEPPNVSNFS WNYAIFWQIS RSKSGDWALC WGDGSCREPK EGEESEATRN LNLRLEDETQ  120
QTMRKIVLQK LHTLFGSSDE YNGALGLDRV TDTEMFLLAS MYFSFPRGEG GPGKCFASGK  180
HVWLSDLLKL ESDYCVRSFL AKSAGVQTIV LVPTDVGVVE LGSVRCVGES LELLQSIRSL  240
FSTQSSLMRS KPLTGFPVMG KRRDENAQLT NLSPVERGEG VPKIFGQDLN SGNSGRPRYR  300
EKLAVRKVEE RPWDVYSNGN RIAFSSPRNG IQGSSWPHIH DAKQGSPTEM YASQSPVNNI  360
QELVNGARDD FRLNHYQPQK QVPIQIDFSG ATSRPSVVAR PVGADSENSD AEAPCKEXGR  420
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYINELQAKL  480
KVMEADRENL GGTSRDASAL GANPGISMEN QSQATDVDIQ AVHDEVVVRV SCPLDSHPAS  540
RVIQAFKEAQ ITVVESKLAA ANDTVFHTFV IKSQGSEPLT KEKLIAAFSR ESNSLQSLSS  600
VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29425487264Transcription factor MYC2
5gnj_B4e-29425487264Transcription factor MYC2
5gnj_E4e-29425487264Transcription factor MYC2
5gnj_F4e-29425487264Transcription factor MYC2
5gnj_G4e-29425487264Transcription factor MYC2
5gnj_I4e-29425487264Transcription factor MYC2
5gnj_M4e-29425487264Transcription factor MYC2
5gnj_N4e-29425487264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233131.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2598480.0KR259848.1 Prunus avium cultivar Tieton bHLH transcription factor (bHLH13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233131.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A251QIB00.0A0A251QIB0_PRUPE; Uncharacterized protein
STRINGXP_008233131.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]