PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233197.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 389aa MW: 45729.3 Da PI: 7.0256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233197.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.2	3.1e-19	34	124	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y +YAk +GFsvrk+k ++ +g++ +r+++Cskeg r+e+ ++ +++ r ++a tr +C a++ v ek +++++ t++e +HnH+l+ XP_008233197.1 34 EYYMSYAKGIGFSVRKDKLVRN-SEGKVCRRRWCCSKEGLRNEKFNDrSDRIRPPKAITRENCSAHFWVGYEKkRDVYVFTNFEPHHNHQLV 124 69***************999.6777***********9988845667779***********99989*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-17	34	124	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-30	246	340	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MVRQSSDDNG VDMIAPRKED VMGKEFKTIE LAEEYYMSYA KGIGFSVRKD KLVRNSEGKV 60 CRRRWCCSKE GLRNEKFNDR SDRIRPPKAI TRENCSAHFW VGYEKKRDVY VFTNFEPHHN 120 HQLVIPLESP YLRCNRVIRK SDLAQAVGMR RALFRTCQTY EYMMDQCGGY LNVGFQIKDL 180 YNKLDASRRE ILLDGDTEAA LCYLKAKGAM DPEFFCTFSV DEENRFGNLF WRDFTSLLDY 240 IAYGDVLIFD SMYKTNVYDK PLVLFVSLNN YRSTVMFGCT LLQDETFETY KWLLETFMAS 300 MKDKKPISIL TDGDEAMRKA IDDVFPMSNH RLCLWHVSRN AQNNLKDDEL LRNFQACIWE 360 PFALDEFEKK WEVLRERTST PKQMVGNDV

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MVRQSSDDNG VDMIAPRKED VMGKEFKTIE LAEEYYMSYA KGIGFSVRKD KLVRNSEGKV  60
CRRRWCCSKE GLRNEKFNDR SDRIRPPKAI TRENCSAHFW VGYEKKRDVY VFTNFEPHHN  120
HQLVIPLESP YLRCNRVIRK SDLAQAVGMR RALFRTCQTY EYMMDQCGGY LNVGFQIKDL  180
YNKLDASRRE ILLDGDTEAA LCYLKAKGAM DPEFFCTFSV DEENRFGNLF WRDFTSLLDY  240
IAYGDVLIFD SMYKTNVYDK PLVLFVSLNN YRSTVMFGCT LLQDETFETY KWLLETFMAS  300
MKDKKPISIL TDGDEAMRKA IDDVFPMSNH RLCLWHVSRN AQNNLKDDEL LRNFQACIWE  360
PFALDEFEKK WEVLRERTST PKQMVGNDV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233197.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233197.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5WZG3	0.0	M5WZG3_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008233197.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-58	FAR1-related sequence 5