PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233246.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 173aa MW: 20508.3 Da PI: 8.5794

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233246.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.3	2.3e-34	5	128	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 frF P++eelv++yL++k + + ++i+e+d++k+ePwd p + ++ ++++fFs+r ky+++ r +r+t+ g+Wk tgk++ + XP_008233246.1 5 FRFLPSEEELVSHYLREKKQVD-----HIIPEIDLCKHEPWDVPGlyaglftEPESPYQDMFFFSPRVYKYNNSARIERTTALGFWKITGKERVI 94 9************9985544.....47***********54666544333344588***************************999 PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +g kktL+fy+gr ++++kt+Wvm ey l XP_008233246.1 95 KA--RGSTGKKKTLTFYEGRVRQSKKTNWVMYEYYL 128 98..5569************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.961	1	156	IPR003441	NAC domain
Pfam	PF02365	2.2E-20	4	127	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-38	5	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDSYFRFLPS EEELVSHYLR EKKQVDHIIP EIDLCKHEPW DVPGLYAGLF TEPESPYQDM 60 FFFSPRVYKY NNSARIERTT ALGFWKITGK ERVIKARGST GKKKTLTFYE GRVRQSKKTN 120 WVMYEYYLVE DEANPNPKLA QQVMQRDFVL CRLKKKADDH TSIYAEAEPA YDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-28	5	156	21	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-28	5	156	21	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-28	5	156	21	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-28	5	156	21	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	5	156	24	168	NAC domain-containing protein 19
3swm_B	2e-28	5	156	24	168	NAC domain-containing protein 19
3swm_C	2e-28	5	156	24	168	NAC domain-containing protein 19
3swm_D	2e-28	5	156	24	168	NAC domain-containing protein 19
3swp_A	2e-28	5	156	24	168	NAC domain-containing protein 19
3swp_B	2e-28	5	156	24	168	NAC domain-containing protein 19
3swp_C	2e-28	5	156	24	168	NAC domain-containing protein 19
3swp_D	2e-28	5	156	24	168	NAC domain-containing protein 19
4dul_A	2e-28	5	156	21	165	NAC domain-containing protein 19
4dul_B	2e-28	5	156	21	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233246.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233246.1	1e-129	PREDICTED: protein NTM1-like 9
TrEMBL	M5X694	1e-100	M5X694_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008233246.1	1e-128	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14450	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	4e-38	NAC transcription factor-like 9