PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233308.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 208aa    MW: 24399.7 Da    PI: 8.2241
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233308.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.6e-142669146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w +
   XP_008233308.1 26 RGHFAEDEIDLILRLHKLLGNR-WSLIAGRLP-GRTGNDVKNFWKT 69
                     678899****************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.13E-18976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-71032IPR009057Homeodomain-like
PROSITE profilePS5129422.8992175IPR017930Myb domain
SMARTSM007173.7E-132573IPR001005SANT/Myb domain
PfamPF002491.4E-122669IPR001005SANT/Myb domain
CDDcd001671.49E-83171No hitNo description
Gene3DG3DSA:1.10.10.605.7E-173371IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEPGFSTFRK SCRLRWLNYL KPSIKRGHFA EDEIDLILRL HKLLGNRWSL IAGRLPGRTG  60
NDVKNFWKTR LSRKMTSVVV EKVKEKSQET KKDIAVRPQS RRLSKTSHYL SGHKTVTSRH  120
NQPEENFSKL PILPSSPIED EADWWETFLE DEDNVKRTKC SFLVLEEDHL TNGCVEDLAE  180
WTRTDFRYLE DCPCWIGSSD MDLWNLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-16107743110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9999850.0KF999985.1 Prunus persica MYB104 mRNA, complete cds.
GenBankKP7722840.0KP772284.1 Prunus cerasifera MYB10.4 transcription factor (MYB10.4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233308.11e-153PREDICTED: transcription repressor MYB6-like isoform X3
TrEMBLA0A0K1TPI01e-131A0A0K1TPI0_9ROSA; MYB10.4 transcription factor
TrEMBLW8QQ691e-131W8QQ69_PRUPE; MYB104
STRINGXP_008233293.11e-146(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-35myb domain protein 113