PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233429.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 177aa    MW: 20844.6 Da    PI: 7.3783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233429.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.33.3e-2851285128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 
                     +rF Pt+eelv  yL++k + +     ++i+ ++i+++ePw+ p+       + ++  + ++fFs+rd ky+  +  r+n at++g+Wk+tgk++
  XP_008233429.2   5 YRFLPTEEELV-SYLREKKQVD-----HIIPGINICNHEPWEVPAlyeglftEPDSPYQGMFFFSPRDYKYSdnNYARTNSATARGFWKTTGKER 93 
                     79*********.9999875543.....47***************64666543222344588**********9434569999************99 PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++  g  +  k+t  fy+gr p  +k +Wvmhey l
  XP_008233429.2  94 VIKA--GGSIVRKRT-FFYEGRVPPYNKNNWVMHEYCL 128
                     9998..445555555.5899****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.5271155IPR003441NAC domain
PfamPF023654.0E-184128IPR003441NAC domain
SuperFamilySSF1019413.53E-305155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDSNYRFLPT EEELVSYLRE KKQVDHIIPG INICNHEPWE VPALYEGLFT EPDSPYQGMF  60
FFSPRDYKYS DNNYARTNSA TARGFWKTTG KERVIKAGGS IVRKRTFFYE GRVPPYNKNN  120
WVMHEYCLIE DEANPTPKLA QQVQRDFVLC CLKKKQDKKD TSIFAQPDEW PLISEVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-22415623169NAC domain-containing protein 19
3swm_B2e-22415623169NAC domain-containing protein 19
3swm_C2e-22415623169NAC domain-containing protein 19
3swm_D2e-22415623169NAC domain-containing protein 19
3swp_A2e-22415623169NAC domain-containing protein 19
3swp_B2e-22415623169NAC domain-containing protein 19
3swp_C2e-22415623169NAC domain-containing protein 19
3swp_D2e-22415623169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233429.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233429.21e-132PREDICTED: protein NTM1-like 9
TrEMBLA0A251QM424e-95A0A251QM42_PRUPE; Uncharacterized protein
STRINGXP_008233429.11e-105(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3984922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-27NAC transcription factor-like 9