PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233506.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 401aa    MW: 45194.9 Da    PI: 9.4844
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233506.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.33.9e-112713081954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +e++ LA+++gL+ +qV++WF N R +
  XP_008233506.1 271 FEHflHPYPSDSEKQMLAQQTGLSRTQVSNWFINSRVR 308
                     664459******************************88 PP
2BELL872.1e-28139209272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     r e+q k ++L  +leeV+k+Yk y++q++ v++sFe++ glg a+pY+s+A kai +hF cLk+ai +++
  XP_008233506.1 139 RVEVQLKNSRLTIMLEEVYKKYKLYCQQMESVVASFETIDGLGDAAPYISFAIKAILKHFGCLKNAILDKL 209
                     7899***************************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-3089207IPR006563POX domain
PfamPF075261.5E-2994205IPR006563POX domain
PROSITE profilePS5007112.519249312IPR001356Homeobox domain
SMARTSM003894.1E-10252316IPR001356Homeobox domain
CDDcd000864.60E-12253313No hitNo description
Gene3DG3DSA:1.10.10.601.8E-28256316IPR009057Homeodomain-like
SuperFamilySSF466896.42E-18257318IPR009057Homeodomain-like
PfamPF059202.4E-18269308IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MADEGFEAFH VPQQSRRDKL RVTLQNNPPQ RFTPTLAMPA ANTSFTFHPH KPTSNPPFSH  60
PFFSDSHQND DALRRPNELR RSVPLGPFTG YASVLKRSRF LKPAQQLLED FCGSGRSDSN  120
PTPPNYLSGR VKDPTTDDRV EVQLKNSRLT IMLEEVYKKY KLYCQQMESV VASFETIDGL  180
GDAAPYISFA IKAILKHFGC LKNAILDKLQ TRGKKPLADD FDHVKGEARG SSDGGQNPSH  240
LSLTNNPHQS ALRCQRGLPE HAVAVLRTWL FEHFLHPYPS DSEKQMLAQQ TGLSRTQVSN  300
WFINSRVRIW KPMVEEIHVL ETQQAQTTSD TSLHPCLELP LQLGILPPIT STQNAQDTQT  360
KRSRKNDHRG VPEQSDQTQR RNSAYGGSHE VSLVLSLQAK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-17258316563Homeobox protein Meis2
3k2a_B9e-17258316563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233506.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM82e-71BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A251QM150.0A0A251QM15_PRUPE; Uncharacterized protein
STRINGXP_008233506.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.19e-74TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]