PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233585.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 196aa    MW: 21512.3 Da    PI: 9.7314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233585.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  XP_008233585.1 47 FECKTCNRQFPSFQALGGHRASH 69
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.2E-94569No hitNo description
PfamPF139123.4E-134671IPR007087Zinc finger, C2H2
SMARTSM003550.164769IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SuperFamilySSF576677.2E-996123No hitNo description
PfamPF139121.3E-9100125IPR007087Zinc finger, C2H2
PROSITE profilePS501578.933101128IPR007087Zinc finger, C2H2
SMARTSM003550.61101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTMKRSITEM RELDPSLTMA NCLMLLSRGS HDHHHYDTFS ASPTRVFECK TCNRQFPSFQ  60
ALGGHRASHK KPRLMGSGDG NSSNGSDQSQ SQGSPPKPKT HECNICGLEF AIGQALGGHM  120
RRHRSALSNN NNNNNTSQYS DSNSLSLSPQ PAPMFQVLKK TNSGRRVMCL DLNLTPLEND  180
LKILQIGKAA PLVGFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233585.11e-144PREDICTED: zinc finger protein ZAT12-like
TrEMBLM5XDR01e-125M5XDR0_PRUPE; Uncharacterized protein
STRINGXP_008233585.11e-144(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-37C2H2 family protein