PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233612.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 358aa    MW: 38741.8 Da    PI: 8.5853
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233612.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.71.1e-3775135262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e+alkcprC+s ntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  XP_008233612.1  75 PETALKCPRCESINTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135
                     67899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2865124IPR003851Zinc finger, Dof-type
PfamPF027013.0E-3278133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.11579133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVFSSVPVYM DPPNWQQQQT NHQQQGGGND QNNHQLPPPP PQEAGCNSEG GGSGSSSIRP  60
GSMSDRARLA KMPQPETALK CPRCESINTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRSKGSGGS GRSKSPAAAG NSSSSTVHSS NSCSTSDNII GHLAHPPPHQ  180
LPFLPSLHHL GDYGSGDMIG LNNFGGMNQA ADVEFQQHQF GSDRLTVRPN LGINMINTEH  240
WRSSLLQHQV QQFPNFLANL EPPTSSHGMY QFEGGNVHQN VGLLPMSKPL DSVSPGVAAT  300
QMANVKMEDN NHQALNLSRN FLGSLGNDHH QYWGNNGGGG NAWTDLSGFT TSSTSHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233612.10.0PREDICTED: dof zinc finger protein DOF3.6
TrEMBLA0A251QNQ10.0A0A251QNQ1_PRUPE; Uncharacterized protein
STRINGXP_008233612.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-41OBF-binding protein 3