PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233716.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 290aa    MW: 32856.7 Da    PI: 6.9718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233716.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-082469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++  a +++  +   +W ++a++++ g+t  +++  +q 
   XP_008233716.1 24 EWTKEENKKFESALAMFDEKtpdRWLKVASMIP-GKTVIDVIKQYQE 69
                     7********************************.*********9996 PP
2Myb_DNA-binding38.33.1e-12124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_008233716.1 124 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVISKTPTQVASHAQKY 168
                      7*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0482075IPR017884SANT domain
SMARTSM007176.7E-92173IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-112378IPR009057Homeodomain-like
CDDcd001673.30E-72470No hitNo description
PfamPF002491.3E-62469IPR001005SANT/Myb domain
PROSITE profilePS5129417.336116173IPR017930Myb domain
SuperFamilySSF466894.93E-16119173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17120172IPR006447Myb domain, plants
SMARTSM007171.1E-9121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10122168IPR009057Homeodomain-like
PfamPF002493.4E-10124168IPR001005SANT/Myb domain
CDDcd001671.07E-8124169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
METLYPASYM ADSNWFIQDS QSSEWTKEEN KKFESALAMF DEKTPDRWLK VASMIPGKTV  60
IDVIKQYQEL EEDVSEIESG RFPIPGYLTS SFTLDLGDDR NFDANRKRPS AARGSDQERK  120
KGIPWTEEEH RRFLMGLLKY GKGDWRNISR NFVISKTPTQ VASHAQKYFM RQHSGGKDKR  180
RPSIHDITTV NLTSTTPSEN NRPPLDQSPP EQKSTESPKA LLDWNACDDG GGMVFGSTHG  240
SLLESSPYDV AAEGIKLQLQ KLYSSANFAA HAKPQNSMYL MQTSRHQIHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-16251001186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233716.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-97DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM5X4P20.0M5X4P2_PRUPE; Uncharacterized protein
STRINGXP_008233716.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-95MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]