PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233759.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-X1
Protein Properties Length: 865aa    MW: 96778.6 Da    PI: 8.4067
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233759.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.16e-06392411120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C++ C+ G+CppC++
  XP_008233759.1 392 CGRHACKRRCCDGDCPPCSE 411
                     ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.65E-661138No hitNo description
PROSITE patternPS01359066132IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.54E-6167215No hitNo description
PfamPF014220.07179196IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072179197IPR000967Zinc finger, NF-X1-type
CDDcd060085.64E-7221260No hitNo description
SMARTSM004380.51231250IPR000967Zinc finger, NF-X1-type
PfamPF014220.95234249IPR000967Zinc finger, NF-X1-type
CDDcd060082.16E-8275318No hitNo description
PfamPF014220.076285303IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0023285304IPR000967Zinc finger, NF-X1-type
CDDcd060083.19E-8329378No hitNo description
PfamPF014220.0032339357IPR000967Zinc finger, NF-X1-type
SMARTSM004380.096339359IPR000967Zinc finger, NF-X1-type
CDDcd060086.44E-8382430No hitNo description
PfamPF014228.4E-4392410IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092392411IPR000967Zinc finger, NF-X1-type
CDDcd060083.68E-10409456No hitNo description
PfamPF014220.0071413437IPR000967Zinc finger, NF-X1-type
SMARTSM004380.015419438IPR000967Zinc finger, NF-X1-type
SMARTSM0043860476497IPR000967Zinc finger, NF-X1-type
PfamPF014224.7486496IPR000967Zinc finger, NF-X1-type
PfamPF0142275505514IPR000967Zinc finger, NF-X1-type
PfamPF014220.17587598IPR000967Zinc finger, NF-X1-type
SMARTSM004388.6587620IPR000967Zinc finger, NF-X1-type
PfamPF014220.084630647IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019630648IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5693714IPR000967Zinc finger, NF-X1-type
PfamPF0142220694712IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MSSPHSDSDT DSDRSHSGSE PVRHSDLSDS IFRSYLEFTG RSSATNTDLS KIQSFLTSSS  60
SGALSCLICL ERIRPAHPTW SCTSVCFSVF HLICIQSWAR QASDLSALRA STRLPISAQK  120
AAEVSLWNCP KCRVEYPQSQ IPKTYFCFCG KLENPPSDDP WVLPHSCGEV CNRPLNHSCG  180
HHCLLLCHPG PCPSCPKLVK ARCFCGSVQD VRRCGFKNFS CNNVCKKLLA CRVHCCSEIC  240
HQGPCPPCPV RAVYRCQCGK REEERECCER LDFRCEEPCE KVLGCGQHKC SKGCHSEDCG  300
PCPFQGKRTC PCGKTVHEGL SCKASVPLCG ATCSKMLSCG YHRCPERCHR GQCIVTCRTV  360
VIKSCRCGSL KKEVPCHQDL TCERKCQRQR DCGRHACKRR CCDGDCPPCS EVCGRKLRCK  420
NHKCPSPCHR GACAPCPVMV TIACLCGETH FEVPCGIEMD QKPPRCPKPC PITLLCRHGK  480
NRKPHKCHYG ACPPCRVLCE EEYPCGHKCK LRCHGPRPPP NPEFTLKPKK KKSLHQSECT  540
PGSPCPPCPE HVWRSCVGQH IGVERMMVCS DKTLFSCENL CGNPLPCGNH FCTKTCHPLK  600
NQSLPSVQQA RSEPCEKCHL PCGKEREPAC SHPCPLSCHP GDCPPCKVLV KRSCHCGSMV  660
HVFECIYYNS LSEKEQMAAR SCGGPCHRKL PYCNHLCPEL CHPGQCSFPE KCSKKVTVRC  720
ACQSLKKEWL CHDVQAAYRN AGSDPKDISK NQFGHALIPC NSNCKSKLKV IDSELQLRRP  780
KIVEVKEPDT DKHGPKRKKR RERVQEVTQI STLQKIVSNV KRFLLLVTLL LLLVAVSYYG  840
YKVLLWLNDW MNEVEEKRQG RYPRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1794800PKRKKRR
2796802RKKRRER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233759.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233759.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLM5X6930.0M5X693_PRUPE; Uncharacterized protein
STRINGXP_008233759.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors