PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233787.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 189aa MW: 20442.2 Da PI: 7.3614

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233787.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.1	9.9e-41	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+rkC++ C++apyf ++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i +lq+++ +l+++la XP_008233787.1 14 SCAACKLLKRKCSPTCIFAPYFLPDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIATLQRKMIELQHDLA 108 6*********************************************************************************************9 PP DUF260 96 llkee 100 ++++ XP_008233787.1 109 IARAR 113 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.492	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-40	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MNMKGSHEPR SSSSCAACKL LKRKCSPTCI FAPYFLPDEP KKFAKVHKVF GASNVSKILT 60 EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIATLQRKM IELQHDLAIA RARLACYASN 120 SLSSSPPTAS ASSCYGVLDD QLSEAAFSAV GFPAYSGFSN SFMSQSAPEL ISHSQHGQTS 180 DFSCAPYIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	9	126	6	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	9	126	6	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233787.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233787.1	1e-138	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A251QLG9	1e-121	A0A251QLG9_PRUPE; Uncharacterized protein
STRING	XP_008233787.1	1e-137	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-63	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]