PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233880.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bZIP
Protein Properties Length: 360aa    MW: 39960.4 Da    PI: 6.1931
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233880.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.9e-10159207553
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                     kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +
  XP_008233880.1 159 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 207
                     9****************************************99887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-16155219IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.657157220IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-8159213No hitNo description
SuperFamilySSF579599.85E-11159210No hitNo description
PfamPF001707.3E-9159207IPR004827Basic-leucine zipper domain
CDDcd147037.85E-24160209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQDPANPKPD PSSSSQASQR PRMTTPFPDP SPSLSFRGSY HRRAQSEVQF RIPDDLDLLQ  60
DPFDGPSGSF EELGGSEDDL FCTYMDIEKL GSKLDDGPSD PKLENPGGST ETGVELGGEM  120
SARPRHRHSN SVDASLDSIE AKKAMAPDKL AELWTVDPKR AKRILANRQS AARSKERKAR  180
YISELERKVQ TLQTEATTLS AQLTLFQRDT TGLSTENSEL KLRVQAMEQQ AQLRDALNDA  240
LKKELERLKI ATGEVLTHTD SYNMGMHQIP YSQSPFFPSQ SQAGQRDSQN IHMPQFHPFQ  300
PNMSAPHQPM LSAAQSHACS DMLQQDSIGR FQGLDISNRG SHLVRPEGPS ISAGESNRRF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233880.10.0PREDICTED: transcription factor RF2b
SwissprotO228731e-123BZP18_ARATH; bZIP transcription factor 18
TrEMBLM5XK210.0M5XK21_PRUPE; Uncharacterized protein
STRINGXP_008233880.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-115bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]