PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233905.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 436aa    MW: 48211.4 Da    PI: 9.7893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233905.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05200222223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg+ F   +nL+ H+ + H
  XP_008233905.2 200 SCPECGEIFMKAENLELHQAVrH 222
                     8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182199227IPR007087Zinc finger, C2H2
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SuperFamilySSF563998.44E-22224434No hitNo description
Gene3DG3DSA:3.90.228.105.6E-14225433IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MATSKLKTQR KPTKQIHQKA QKQNQNQNQK PQKTEKPPYW SVVRGLLTCK HLQPLQPQQE  60
RKKQLPQQQQ QHEQAMEESN AAKKSKKMRC SGSLCNNTKI MHRPEIGSPE VHKKRASMGS  120
CNSNETSSRS MKAPLHELNG VVSTSSSSLS AVSTNNSSVG AGSFRAMPFR RFSGCYECRM  180
VVDPVLGFAR DPSLRGSICS CPECGEIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII  240
FQSSWLKKQT PICKIDRILK VHNTQKTISK FEEYRESIKA KATKLPKKHP RCIADGNELL  300
RFHSTTFVCS LGLNGSSNLC NSIPHCNICS IIKNGFNKFS GDLIEDGILT TATSGRAHDK  360
AVVAAEDSGK RAMLVCRVIA GRVKKNMEDG IGIGPIGMEE YDSVAGAVGV YSNLDELYVF  420
NPKAILPCFV VIYGGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233905.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233905.20.0PREDICTED: uncharacterized protein LOC103332917
TrEMBLA0A314Y3020.0A0A314Y302_PRUYE; Uncharacterized protein
STRINGXP_008233905.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-103C2H2-like zinc finger protein