PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233939.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 603aa    MW: 66597 Da    PI: 7.0031
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233939.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.73e-25131235199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f k+ltpsd+++ g +++p+ +a+++        + + +++ tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD+vvF+  ++
  XP_008233939.1 131 FAKILTPSDANNGGGFSVPRFCADSIfpalnyqaEPPVQTPSTLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFM--RN 223
                     89*********************999****998744445788*************************************************..66 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     s++e++v+v+r+
  XP_008233939.1 224 SRGEMFVGVRRA 235
                     9999*****996 PP
2Auxin_resp93.33.9e-31283366183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+ + +FevvY+P+a++s+Fvvk+e vekal+v +s+GmR+km++etedss+ ++ +Gt ++vs  d+  W++S+Wr+L+
  XP_008233939.1 283 AAEMAAAGRPFEVVYYPKAGWSDFVVKAEVVEKALNVFWSAGMRVKMSVETEDSSRMTWfQGTLSSVSIPDNRPWQRSPWRMLQ 366
                     6889999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-33122244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-26125243IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-20130234No hitNo description
PfamPF023627.3E-23131235IPR003340B3 DNA binding domain
SMARTSM010191.6E-19131236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224131236IPR003340B3 DNA binding domain
PfamPF065072.0E-28283366IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MPPTPHPPSH HHPHSHSHSP HRPIDPKIWR ACAGNSVQIP ILHSRVYYFP QGHLEQSSSS  60
APLLLSPLVL SKPLILCRIS AVHFLADPTT DEVFAKLLLL PIPNHEPTNR HEPPNDDVFD  120
DANETDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPAL NYQAEPPVQT PSTLSVTDLH  180
GVVWDFRHIY RGTPRRHLLT TGWSKFVNHK MLVAGDSVVF MRNSRGEMFV GVRRAVRSTV  240
SSDCASRWSS HIGGGATTTM RVKTEDQEGS GRKVMSAEAV VGAAEMAAAG RPFEVVYYPK  300
AGWSDFVVKA EVVEKALNVF WSAGMRVKMS VETEDSSRMT WFQGTLSSVS IPDNRPWQRS  360
PWRMLQVTWD EPEVLQNAKR VSPWQVDYVA STPSIHTAFP PAKRFRAPMS PGLLTNAEEE  420
FFFPVPGAPN STMGQLNASL LNYNTFPAGM QGARQDLYCV SNLSHLLSEN TPQMCTYNSF  480
GNNVVPKLKR VSTELNIGSS QSDELSPDSQ SSVHSFGTEL DGNRYCNSTK VGRSSFQLFG  540
KIIHMNQPVE GGFDDVGCTE DNGNKGYNAT EGVNNQLDLS YSKLLERLDV QYQRASAVEA  600
CSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-692738722353Auxin response factor 1
4ldw_A4e-692738722353Auxin response factor 1
4ldw_B4e-692738722353Auxin response factor 1
4ldx_A4e-692738722353Auxin response factor 1
4ldx_B4e-692738722353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233939.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2L1GH290.0A0A2L1GH29_9ROSA; Auxin response factor
STRINGXP_008233939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-173auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]