PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008233952.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 367aa MW: 41599.7 Da PI: 6.8065

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008233952.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	80	119	3	42
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 ++k++rr+++NReAAr+sR RKka++++Le+ +L + XP_008233952.1 80 SDKVQRRLEQNREAARKSRMRKKAYVQQLETSRLKLAQLE 119 79****************************8544443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-10	75	128	No hit	No description
SMART	SM00338	1.8E-5	78	138	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-8	80	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	80	122	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.0E-8	82	124	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-26	171	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MLQERMSYPS TQFATSRQMG IYEPFRQVGV WKETFRGDHS SNTGASSILE VDAGIETKIG 60 YVSHESLAPS GNDQEPNRSS DKVQRRLEQN REAARKSRMR KKAYVQQLET SRLKLAQLEQ 120 ELDRARKQGA YVASSLGTSH MGYNGALNSG ITTFEMEYGH WVEEQHRQNV ELRNALQDHG 180 TDIELLRILV ESGLSHYANL FRMKADAARA DAFYLLSGIW RTSVERHFHW IGGFRPSELL 240 NIVLPQLQPL DDPQFVDFCN LRQSSQQAED ALTQGMEKLQ QNLALTIAGD QISGESYGSQ 300 MATALEKLEA LETFVGQADH LRQQTLQQMS RILTTHQAAR GLLALGEYFH QLRALSSLWT 360 ARPRELT

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MLQERMSYPS TQFATSRQMG IYEPFRQVGV WKETFRGDHS SNTGASSILE VDAGIETKIG  60
YVSHESLAPS GNDQEPNRSS DKVQRRLEQN REAARKSRMR KKAYVQQLET SRLKLAQLEQ  120
ELDRARKQGA YVASSLGTSH MGYNGALNSG ITTFEMEYGH WVEEQHRQNV ELRNALQDHG  180
TDIELLRILV ESGLSHYANL FRMKADAARA DAFYLLSGIW RTSVERHFHW IGGFRPSELL  240
NIVLPQLQPL DDPQFVDFCN LRQSSQQAED ALTQGMEKLQ QNLALTIAGD QISGESYGSQ  300
MATALEKLEA LETFVGQADH LRQQTLQQMS RILTTHQAAR GLLALGEYFH QLRALSSLWT  360
ARPRELT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008233952.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008233952.1	0.0	PREDICTED: transcription factor TGA3 isoform X3
Swissprot	Q93ZE2	1e-152	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A314UVR0	0.0	A0A314UVR0_PRUYE; Transcription factor TGA3 isoform X3
STRING	XP_008233950.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-154	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]