PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233985.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 346aa    MW: 38888.5 Da    PI: 5.1067
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233985.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  XP_008233985.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                    79********************************************9997 PP
2K-box21.97.3e-09121190978
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                     + +++ e+lqqe+  L++++++ ++++R +  + L+  s+ e ++ e+ L + l+++ ++K+ ll ++++
  XP_008233985.1 121 AVSSEIEELQQEIGGLQQQLQMAEEQIRIYEPDPLKIASMAEFESCEKSLMDTLTRVMQRKEYLLSNHLS 190
                     557889***********************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-29280IPR002100Transcription factor, MADS-box
CDDcd002652.54E-37275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVFTRY INLPDQEREH AIIFPDHSKH PDLQNKEYLL RTLQQLRSEN DIALQLANPT  120
AVSSEIEELQ QEIGGLQQQL QMAEEQIRIY EPDPLKIASM AEFESCEKSL MDTLTRVMQR  180
KEYLLSNHLS SYDSSGMPQV LPGSFENEVA GWLSSGGHNQ TQIYDASAPL DHQLRNLSST  240
LYDPFSQGTS SNADPSSMGE CHVSVTNASD GELPPWPQAY TNSSGHPSNL MPSGLLPQFQ  300
HTMVGSNMPE IMPHEQVEIP VGSPNVQAYN EGAEYHENKV PQLNGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-17184185MEF2 CHIMERA
6bz1_B9e-17184185MEF2 CHIMERA
6bz1_C9e-17184185MEF2 CHIMERA
6bz1_D9e-17184185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233985.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X4
SwissprotQ9LM461e-134AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLM5XW510.0M5XW51_PRUPE; Uncharacterized protein
STRINGXP_008233985.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-126AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]