PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234047.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CAMTA
Protein Properties Length: 1136aa    MW: 127489 Da    PI: 5.8453
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234047.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.76.2e-55411572118
            CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     l+ k+rwl++ ei++iL n++k+++++e+++ p+ gsl+L++rk +ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fqr
  XP_008234047.1  41 LEAKHRWLRPAEICEILRNYKKFHISSEPASMPPGGSLFLFDRKLLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQR 135
                     6679******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Lee+l++ivlvhy+evk
  XP_008234047.1 136 RSYWMLEEDLQHIVLVHYREVK 157
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.59136162IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7639157IPR005559CG-1 DNA-binding domain
PfamPF038594.8E-4942155IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-6545631IPR013783Immunoglobulin-like fold
PfamPF018339.6E-7546630IPR002909IPT domain
SuperFamilySSF812964.51E-18546631IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.4E-13714841IPR020683Ankyrin repeat-containing domain
CDDcd002042.57E-9726838No hitNo description
SuperFamilySSF484034.68E-13728842IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.239729850IPR020683Ankyrin repeat-containing domain
SuperFamilySSF525409.03E-89541009IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001526958980IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364960988IPR000048IQ motif, EF-hand binding site
PfamPF006120.052961979IPR000048IQ motif, EF-hand binding site
SMARTSM000150.00399811003IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.5789821006IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-49841003IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1136 aa     Download sequence    Send to blast
MYEIQVGSGC GISVTTTRIE FMADTKRYGL GNQLDIAQIL LEAKHRWLRP AEICEILRNY  60
KKFHISSEPA SMPPGGSLFL FDRKLLRYFR KDGHNWRKKK DGKTVKEAHE RLKAGSVDVL  120
HCYYAHGEEN ENFQRRSYWM LEEDLQHIVL VHYREVKGNR TNFNHTKGTE EAVPYSHETE  180
EIALNSEMEN SVSSSFNPNT FQMRSQATDT TSLSSAQASE FEDAESAYDH QASSRSQPFL  240
ELLQPKAEKI NAGFSDAFYP MSFSNNYQEK LSAIPGVNFG SLTQAYKRED GNDADVTYEP  300
TKNLNSSLWE AALENSATGF QSLSFQPSFS ATHSDMMGII SKQENGMLGH LFTDSFEKKQ  360
MCESKPRVQQ GWQTLEENSS CSSSWLMDRN LHSNTVDDVS SFHEGLNAAN LLNSLAPCHM  420
NSDKTNDYSI PNDLQIQPST TEQEYYLKSI SKRNETIEGK ANHTSAIKPL LDGPFTEGLK  480
KLDSFNRWMS RELGDVDDTQ TQSNSETYWD TVESENGVDE SSVPLQVRLD SYMLGPSLSQ  540
DQLFSIIDFS PNWAYENSEI KVLITGRFLK SQQAEACKWS CMFGEVEVRA EVIADGVLRC  600
YTPVHKAGRV PFYVTCSNRL ACSEVREFEY RVGQIPDYDA KDDNSGCTND ILSMRFGKLL  660
SLSSTSPIFD PNSLAENSVL INKIDSLLKN DNGEWDRMLQ LTSDEDFSLE RVEEQLLHQL  720
LKEKLHVWLL QKLAVGGKGP SVLDEDGQGV LHFGAALGYD WVLLPTITAG VSVNFRDVNG  780
WTAXXWAAFC GRERTVASLI SLGAAPGALT DPSTKYPTGR TPADLASAQG HKGIAGYLAE  840
SALSAHLSSL NLDTLNLDIK EGNNAGISGA NAVQTVSERI ATPIRNGDLT DGLSLRDSLT  900
AVCNATQAAA RIHQAFRVKS FQRKQLKEYG GNEFGISDEH ALSLIAVKSH KPGKRDEHFD  960
AAAIRIQNKF RSWKGRKDYL IIRQRIVKIQ AHVRGHQVRK NYRKIVWSVG IVEKIILRWR  1020
RKGSGLRGFK SETLIEGPSI QVSSLKDDDY DLLKEGRKQN EERLQKALAR VKSMVQYPEA  1080
RDQYRRLLNV VTEIKETKVV CDSAVNSSEG RADMDDDLID FAELLDEDIF MPTAGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A1e-13546633991calmodulin binding transcription activator 1
2cxk_B1e-13546633991calmodulin binding transcription activator 1
2cxk_C1e-13546633991calmodulin binding transcription activator 1
2cxk_D1e-13546633991calmodulin binding transcription activator 1
2cxk_E1e-13546633991calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234047.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234047.10.0PREDICTED: calmodulin-binding transcription activator 3
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A251NSH90.0A0A251NSH9_PRUPE; Uncharacterized protein
STRINGXP_008234047.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]