PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234066.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 239aa    MW: 26519.6 Da    PI: 6.513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234066.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.1e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W++I+  ++ gR++k+c++rw + 
   XP_008234066.1 12 KGSWSPQEDSTLIKLVAQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 57
                     799*****************************.***********985 PP
2Myb_DNA-binding582.1e-1866108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed ++v+a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_008234066.1  66 SFTQQEDNIIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 108
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.455762IPR017930Myb domain
SuperFamilySSF466892.18E-2910105IPR009057Homeodomain-like
SMARTSM007171.2E-151160IPR001005SANT/Myb domain
PfamPF002491.9E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241365IPR009057Homeodomain-like
CDDcd001671.01E-141456No hitNo description
PROSITE profilePS5129420.90863113IPR017930Myb domain
SMARTSM007171.6E-1563111IPR001005SANT/Myb domain
PfamPF002491.4E-1565108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2366112IPR009057Homeodomain-like
CDDcd001672.00E-1266109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSVTNSDEDR VKGSWSPQED STLIKLVAQH GPRNWSLIST GIPGRSGKSC RLRWCNQLSP  60
TVQHKSFTQQ EDNIIVRAHA LHGNKWATIA RLLPGRTDNA IKNHWNSTLR RRRQLAELSS  120
ASSDSNSAAP IRYEPGMKRQ CLRVSPEPDS FKADVGGDGV VETSLTLSPP GEKEENEVVL  180
KSEDHDDEGK CAVEMEDKCL LTIMQRMIAQ EVRNYVDSLR AEDGPTSFGL QSAALQNDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-39111123104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234066.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700275e-81KC770027.1 Pyrus pyrifolia microsatellite TXY079 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234066.11e-179PREDICTED: transcriptional activator Myb-like
SwissprotO231608e-54MYB73_ARATH; Transcription factor MYB73
TrEMBLM5XTD91e-161M5XTD9_PRUPE; Uncharacterized protein
STRINGXP_008234066.11e-178(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-55myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]