PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234272.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 303aa    MW: 33852.9 Da    PI: 4.9156
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234272.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35271172101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_008234272.1  27 FLTKTYQLVDDPTIDDVISWNDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDR---------WEFSNDCFRRGEKRLLCE 112
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r++
  XP_008234272.1 113 IQRRR 117
                     ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3817111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5723116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.54E-3624116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAPTSVEPNG GESTSSESSH RALPTPFLTK TYQLVDDPTI DDVISWNDDG SSFVVWNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV IPDRWEFSND CFRRGEKRLL CEIQRRRIMP  120
PAPAVAVSPM ATAAVVPNAK PMISPSNSGE EQVISSSSSP IRAPSELMDE NEKLRKENMQ  180
LTKELADVKS LCNNIFSMVS NYAYAQSESG FPYVKPLDLM PEKRFSGDGE KEEEEASPKL  240
FGVAIGAKRA RETVGDGVEE DETGLRLQQP SGGGDVKSEP LDVDRQETPW LNQRHMANQR  300
VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-262711629129Heat shock factor protein 1
5d5v_B7e-262711629129Heat shock factor protein 1
5d5v_D7e-262711629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234272.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW42e-95HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM5X1X70.0M5X1X7_PRUPE; Uncharacterized protein
STRINGXP_008234272.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-93heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]