PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234325.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 260aa    MW: 29686.7 Da    PI: 5.3953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234325.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-0790136654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       +Er+RR+ +    + Lr+llP+ +    ++K s +e   +Av+YI ++
  XP_008234325.1  90 RDNERQRRQLMAVLNASLRSLLPHeL---IKGKRSISEHMNEAVNYITQM 136
                     679*********************88...******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.62E-582141No hitNo description
SuperFamilySSF474593.27E-884154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.06484136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-688155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-590136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MFPNFYHPND QSKDLEFQIS SNDPHQEDMM QIEDLVPGHE VLPEGSDPSH NNKKMGKGKQ  60
QQQHMILFAH PDNNEANPSD VKVERKIVRR DNERQRRQLM AVLNASLRSL LPHELIKGKR  120
SISEHMNEAV NYITQMKRKI QELNAKKEKL RRLYEYDSSA QEFGLENETL GHDLVNSVTN  180
IMVGPTCFGG VEVVINSSCS EDEGLPLSRV LKLLLAEGLC VVECASTRVN ERVFHTIQCE  240
VDDLECVDLS ELQLKLNLQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137152RKIQELNAKKEKLRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234325.10.0PREDICTED: transcription factor bHLH36-like
TrEMBLA0A251QR540.0A0A251QR54_PRUPE; Uncharacterized protein
STRINGXP_008234325.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-39bHLH family protein