PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234326.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 255aa    MW: 28527.7 Da    PI: 10.0961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234326.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.1e-1268119355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++h e+Er+RR+++ +  + Lr+llP      +++K s ++   +Av+YIk+Lq
  XP_008234326.1  68 MMHRENERQRRQEMGTLHASLRSLLPLeF--IKQGKRSISDHMNEAVNYIKHLQ 119
                     68*************************55..79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-763123No hitNo description
SuperFamilySSF474597.72E-1264136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.91365118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-968119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-869134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002871124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMFPLHQSKK LVFQTSSNPP QKHTISEDRI LGHAISTGKS RRRKLVAAFN YDMIDHNSND  60
HNKKKKMMMH RENERQRRQE MGTLHASLRS LLPLEFIKQG KRSISDHMNE AVNYIKHLQS  120
RIKRLDAKRA ELKKCSNIMS TTGTDHGATT GSSDGRSPSC LTVHPCCGGV QIVISSRGFR  180
STKDGLSLSF SISRVLEVLL EQGLAVVSCV SSKGNDRLLH TIQCEVNDLE SIDLSGLEQK  240
LAELVSPFSS RCISE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234326.10.0PREDICTED: transcription factor bHLH36-like isoform X1
TrEMBLA0A251QMY90.0A0A251QMY9_PRUPE; Uncharacterized protein
STRINGXP_008234326.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-45bHLH family protein