PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234477.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27808.6 Da    PI: 8.5877
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234477.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.71e-30958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rienk+nrqvtfskRrng+lKKA+ELSvLCda+va+ii ss+gklye+ 
  XP_008234477.1  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQVALIISSSRGKLYEFG 58
                    69**********************************************95 PP
2K-box91.91.1e-3079170899
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++e+++++l+qe++kLk ++e+Lq +qRhllGedLe+L lkeL +Le+qL+k l+k R++K+e++++ +eel++ke++l+eenk+L+++le
  XP_008234477.1  79 NVAENETQNLYQEVSKLKVKYESLQLSQRHLLGEDLEKLRLKELVNLENQLDKTLSKARQRKTEMMYDRLEELRQKENDLREENKQLKSELE 170
                     38999***********************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.118161IPR002100Transcription factor, MADS-box
CDDcd002651.52E-41277No hitNo description
SuperFamilySSF554551.31E-32284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.6E-2582169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.91685177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRRKVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AQVALIISSS RGKLYEFGST  60
DVNKILERYR QCCYSLQGNV AENETQNLYQ EVSKLKVKYE SLQLSQRHLL GEDLEKLRLK  120
ELVNLENQLD KTLSKARQRK TEMMYDRLEE LRQKENDLRE ENKQLKSELE LEEHAQATLQ  180
GPGELPLTKD NRIESEHPSL RLQIWDHQPA PQEKAADDDQ GRAMVGGSKS NCNQRGWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22171171MEF2C
5f28_B1e-22171171MEF2C
5f28_C1e-22171171MEF2C
5f28_D1e-22171171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475490.0KP347549.1 Prunus pseudocerasus MADS-box protein MADS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234477.11e-174PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR14e-78MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A251QMZ31e-163A0A251QMZ3_PRUPE; Uncharacterized protein
STRINGXP_008234477.11e-173(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-67AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]