PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234521.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 329aa MW: 36112 Da PI: 8.4687

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234521.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.5	6.4e-25	86	130	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_008234521.1 86 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 130 79****************************************986 PP
2	QLQ	64.7	2.4e-22	24	60	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk XP_008234521.1 24 SPFTVSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 60 89*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.7E-13	24	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.576	25	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.7E-16	25	59	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	86	130	IPR014977	WRC domain
Pfam	PF08879	3.8E-21	87	129	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MNTCATGAGG GGGGGAAGMT GMRSPFTVSQ WQELEHQALI FKYMMAGMPV PPDLVLPIQK 60 SFESISQRLF HHPTMGYCSF YGKKVDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG 120 RNRSRKPVES QTMTQSSSTV TSLTVTASSS GTGSFQNLPL NAFGNTQGTS SGTNQSHYQI 180 DSIPFGIPNK DYRYLQGLKP EIGEHSFLSD ASGSNRGLQM DSPLDSTWPL MPSRVGSFPA 240 SKSGDGSILH HDYPQHSFFN NAFPSESVKQ EGQSLRPFFD EWPKGRDSWS GLEDERSNQT 300 SFSTTQLSIS IPMTSSDISA TSSRSPRDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008234521.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235264	4e-67	AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234521.1	0.0	PREDICTED: growth-regulating factor 4-like
Swissprot	Q6AWY4	5e-91	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A251QQB8	0.0	A0A251QQB8_PRUPE; Uncharacterized protein
STRING	XP_008234521.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4781	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-46	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]