PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234852.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 644aa    MW: 70135.5 Da    PI: 6.8862
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234852.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.83.8e-1032736442374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++ L+e+A+a+s+g+ e+a ++L+rl +    +p+ ++ qRl  ++t AL++r++     + +  p++e     s+e++ +++l++e+sP+++f+
  XP_008234852.1 273 KQSLMEAATAISEGKSEAAAEILTRLTTSqvPNPRPNSEQRLLEVMTLALKSRVNP----VDNPPPVTE---LFSQEHTGSTQLLYELSPCFRFG 360
                     578**********************988744677779******************9....443333333...3499******************* PP

            GRAS  95 hltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     +++aN aIlea+ ++    ++vH+iDfdi+qG+Q++ LlqaL +R +g p +++iT+v++  +g +++l  ++++L+k+A++ gv +efn+ v++
  XP_008234852.1 361 FMAANLAILEATLTDksatNKVHVIDFDIGQGGQYVLLLQALDARLNGLPaTVKITTVAD--NGGEDRLTMVRQNLSKVAKQHGVVLEFNI-VSQ 452
                     ***********9777678899*************************88776*********..77**************************9.8** PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     +l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+lsP+vv++veqe+++n+++F++r+ e++ yy al++s++++ + ++
  XP_008234852.1 453 KLAELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLSPRVVTLVEQELNTNTAPFMARVKETCGYYGALLESIKSTEAGDN 547
                     ***************************************************************************************9988999* PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvS 371
                     +er+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++++  k  l+  +   + g++v+ee+g + +gW +r+L+++S
  XP_008234852.1 548 SERVKAEEA-LSRKLINSVACEGRDRVERCEVFGKWRARMGMAGFELRPMSQNMTEVLKQRLSSGNnrvNSGFTVKEENGGVGFGWISRTLTVAS 641
                     *********.*******************************************9999988886544235789*********************** PP

            GRAS 372 aWr 374
                     aWr
  XP_008234852.1 642 AWR 644
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.927246621IPR005202Transcription factor GRAS
PfamPF035141.3E-100273644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQSGFTGGAG AGGVPDFYAG GRSISIATAM NNHHQHPSQP PYHRSSLSGL FLDNPSSQIA  60
RQTQSQSQFQ TQNPSTLIGK RTLAEFQAHQ QQHHYHNPNQ NLYLRSLKPR TFQHSSPISP  120
LSPIDFSSSS TITGSDSSSS ASSLLSHQRF GLPLLQQLRP QPVHQTLPPA GSFVNNNPVQ  180
NQTRVVSGVD SEKKMISNRL QELEKQLLDD NDEEDEGDAV SVITKTSSEW SETIQNLIGP  240
GPGQSQKPVS PSPTSSSSSS SSVASPASST CSKQSLMEAA TAISEGKSEA AAEILTRLTT  300
SQVPNPRPNS EQRLLEVMTL ALKSRVNPVD NPPPVTELFS QEHTGSTQLL YELSPCFRFG  360
FMAANLAILE ATLTDKSATN KVHVIDFDIG QGGQYVLLLQ ALDARLNGLP ATVKITTVAD  420
NGGEDRLTMV RQNLSKVAKQ HGVVLEFNIV SQKLAELNRE SLGCEPDEPI AVNFAFKLYS  480
MPDESVSTDN PRDELLRRVK GLSPRVVTLV EQELNTNTAP FMARVKETCG YYGALLESIK  540
STEAGDNSER VKAEEALSRK LINSVACEGR DRVERCEVFG KWRARMGMAG FELRPMSQNM  600
TEVLKQRLSS GNNRVNSGFT VKEENGGVGF GWISRTLTVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-402746446375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234852.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234852.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-174SCL8_ARATH; Scarecrow-like protein 8
TrEMBLM5XS400.0M5XS40_PRUPE; Uncharacterized protein
STRINGXP_008234852.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-158SCARECROW-like 8