PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234856.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 432aa    MW: 48002.3 Da    PI: 7.0496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234856.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++k++G g+W++ ++  g++R++k+c++rw +yl
   XP_008234856.1 18 KGPWTPEEDEKLVEYIKRYGHGSWRALPKLAGLNRCGKSCRLRWTNYL 65
                     79********************************************97 PP
2Myb_DNA-binding51.91.7e-1671116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++++ G++ W++Ia+ ++ gRt++++k++w+++l
   XP_008234856.1  71 RGNFSQEEEQTIINLHALVGNK-WSAIANNLP-GRTDNEIKNFWNTHL 116
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9821365IPR017930Myb domain
SMARTSM007173.0E-161767IPR001005SANT/Myb domain
SuperFamilySSF466892.9E-3117112IPR009057Homeodomain-like
PfamPF002499.2E-181865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-251972IPR009057Homeodomain-like
CDDcd001676.35E-132065No hitNo description
PROSITE profilePS5129426.32766120IPR017930Myb domain
SMARTSM007172.2E-1670118IPR001005SANT/Myb domain
PfamPF002491.7E-1571116IPR001005SANT/Myb domain
CDDcd001674.71E-1273116No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2773120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGRSASGWCD EKSSLVKKGP WTPEEDEKLV EYIKRYGHGS WRALPKLAGL NRCGKSCRLR  60
WTNYLRPNIK RGNFSQEEEQ TIINLHALVG NKWSAIANNL PGRTDNEIKN FWNTHLKKKL  120
LQMGIDPVTQ RPITANNSDN NIHHLYYLMI NHILSSLAPQ LLASSSFSGT CGSLANNNLI  180
MNMNPWGINN NADLMRLHYF DAKIQVLRNI LVQQFLSSTN TPNVEATFNY LLPSYSSSSV  240
HDHIDHEYSR VNINHNNYSP HLQGFSNGGA PIGFVPQNPT HASAQPSNLN SNISSLLKAL  300
HELDHSQPPR APPVLVPSSG SGKSDKLLGY DDHAPFFSST TGSNKICTNN NNNRDRSSSS  360
YATPTDDHDQ LPLLVSSAAP SPESSAANPT VDNSISNTTY STTFEAWGNP PDPMDHDDEA  420
TNHSYWKDII ME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30181207108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234856.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234856.10.0PREDICTED: transcription factor MYB36-like
TrEMBLA0A251QQ380.0A0A251QQ38_PRUPE; Uncharacterized protein
STRINGXP_008234856.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2295744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-73myb domain protein 9