PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234884.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 249aa    MW: 29027.2 Da    PI: 5.982
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234884.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.81.6e-26139188352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     + ++l++++kyF+lpi++AAk+L+v+lTvLKr+CR++ I+RWPhRkiksl
  XP_008234884.2 139 AALELDEIQKYFDLPITQAAKKLNVGLTVLKRRCRELKIMRWPHRKIKSL 188
                     6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.12128210IPR003035RWP-RK domain
PfamPF020426.6E-24141188IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPIFSQMDSI QLQVPKIEIN PHGFDSLQYY QDPLHENVSL EEHLQLDNLF EFNSIPLEWD  60
QNQHPHMGFQ GFEDLGSWDF MLDNTDFTSP CDYVVVDEKP VTTMVDSFDY SKNPTSDLDE  120
ASRMADWGSN GIYNKKKSAA LELDEIQKYF DLPITQAAKK LNVGLTVLKR RCRELKIMRW  180
PHRKIKSLKA LIENVKGLGL TNELKMLEEQ KRLLEQLPDM ELTERAKKLR QASFKANYKM  240
KRSLTNARP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234884.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234884.20.0PREDICTED: protein RKD4
TrEMBLA0A251QP121e-177A0A251QP12_PRUPE; Uncharacterized protein
STRINGXP_008234884.11e-101(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.17e-42RWP-RK domain-containing protein