PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235184.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 543aa    MW: 60313.2 Da    PI: 4.8504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235184.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l+++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_008235184.1 14 KGRWTAEEDQILINYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
   XP_008235184.1  67 RGNISAQEEDIIIKLHASLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.678961IPR017930Myb domain
SuperFamilySSF466891.03E-2711108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002497.4E-151461IPR001005SANT/Myb domain
CDDcd001672.64E-91661No hitNo description
PROSITE profilePS5129424.90362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002496.4E-1467112IPR001005SANT/Myb domain
CDDcd001675.13E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGRAPCCDKI GLKKGRWTAE EDQILINYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SAQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR  120
RPTTTTSDQM SSLPAAASNN IPSKRRGGRT SRWAMKKSKT YTTTNSTNYT QRHNKGQKEI  180
TNIAAADDEA IALEKKTSLP GPNDNIIDTM HRDYMVLMTD PAADHHDHHP HHMDDCRVDN  240
LVNHDHDHQQ QEEAGGLAIP VVLMSSTTTT TTTEDEDEKE EVVVEVEVEK KETRDHDGLC  300
PVNIDQCQKE SQEMLLGPHP HNDENKDDDL DESGGIEFDG GLLGTFNELM DNVELLQKDP  360
NSNGVLSDHQ HDHAMGVTHE VYQVETTTTA TATTCGHLSS SSNGQLCFSS IMSMTATSSS  420
SASASAAAGS YYFDMEDGQA AAANGNDRDH NNHILWDWES VVEAGHELWD HDDDKENMLS  480
WLWEEGTCSS STTSNTTAAA AAAANTIDRH LNWEGDTTTY DTSMMRKAVD ADKQNAMVAW  540
LLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24121185110B-MYB
1h8a_C8e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9386820.0GU938682.1 Prunus avium R2R3-MYB transcription factor (MYBF1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235184.10.0PREDICTED: transcription factor MYB29
TrEMBLA0A251N7760.0A0A251N776_PRUPE; Uncharacterized protein
STRINGXP_008235184.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-75myb domain protein 12