PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235213.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 208aa    MW: 23868.4 Da    PI: 4.8464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235213.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.81.4e-25153859
                    EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  8 rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                    rKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+ +Hnh+
  XP_008235213.1  1 RKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTCSHNHP 53
                    9*******************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031063.8E-21153IPR003657WRKY domain
SuperFamilySSF1182902.62E-20155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-24155IPR003657WRKY domain
PROSITE profilePS5081128.151155IPR003657WRKY domain
SMARTSM007748.8E-25154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
RKYGQKPIKG SPYPRGYYRC STSKGCSAKK QVERSKTDAS VLIITYTCSH NHPGPDVSTT  60
NLTQLQPSTE DHNLPALLPK QEEQEKEEQE KEPEKEKEEK QGKLEDHPAM KSDHEDHFHY  120
IQSPIRSSQN IMIEQEEDPF LEKTHVSSTL GFLLDEEPLS YSQLMSFSTP KSEENDFFDE  180
LEELPTFSSF PSFMRSNLSL ERIPSVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-171552379Disease resistance protein RRS1
5w3x_D3e-171552379Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1803062e-65DQ180306.1 Fragaria x ananassa clone PBCESTFXA1 SSR marker.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235213.11e-151PREDICTED: probable WRKY transcription factor 69, partial
TrEMBLA0A314YPR11e-133A0A314YPR1_PRUYE; Putative WRKY transcription factor 69 isoform X1
STRINGXP_008235213.11e-150(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-28WRKY DNA-binding protein 35