PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235220.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ARR-B

Protein Properties

Length: 197aa MW: 22596.2 Da PI: 5.6063

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235220.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	28.6	3.1e-09	166	187	2	24
G2-like 2 prlrWtpeLHerFveaveqLGGs 24 rl+Wt +LH++Fv av+qLG + XP_008235220.1 166 RRLVWTAQLHHQFVTAVNQLG-H 187 69******************5.4 PP
2	Response_reg	75	2.8e-25	12	120	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTS.EHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgm.dGlellkeireeepklpiivvtahgeeedalealka 92 +l+vdD+++ + +l+++l++ +y +v+ ++ +eeal +l+e + +D+++ D+ mp+m +G++ll++ e klp+i++++ ++ e++++ + XP_008235220.1 12 ILVVDDDETCLFILERMLQSLKY-QVTKCRGAEEALCILREDKgkFDIVISDVHMPTMeEGFKLLETVGLEM-KLPVIMMSSDDNHETMKKGIIH 104 89*******************.***********888888********659***96654.8***************** PP TESEEEESS--HHHHH CS Response_reg 93 GakdflsKpfdpeelv 108 Ga d+l+Kpf++ +l+ XP_008235220.1 105 GACDYLVKPFQRTALR 120 *********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.2E-34	9	134	No hit	No description
SuperFamily	SSF52172	4.98E-31	9	141	IPR011006	CheY-like superfamily
SMART	SM00448	2.5E-25	10	123	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	35.725	11	127	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	5.2E-22	12	120	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	7.87E-22	13	126	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-8	163	189	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MEEDEFPIGL KILVVDDDET CLFILERMLQ SLKYQVTKCR GAEEALCILR EDKGKFDIVI 60 SDVHMPTMEE GFKLLETVGL EMKLPVIMMS SDDNHETMKK GIIHGACDYL VKPFQRTALR 120 LIWQHVVRNR RNMVALAAAV AEPKSCVLVE DDDDDDLVAS PAKKRRRLVW TAQLHHQFVT 180 AVNQLGHKST YYECFTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:15282545, ECO:0000269\|PubMed:16407152}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235220.1	1e-146	PREDICTED: two-component response regulator ARR14-like
Swissprot	Q9ZWJ9	1e-58	ARR2_ARATH; Two-component response regulator ARR2
TrEMBL	M5VIP8	1e-116	M5VIP8_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008235220.1	1e-146	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15926	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01760.1	9e-54	response regulator 14

Publications ? help Back to Top
Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Takahashi N,Umeda M Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Arnaud D, et al. Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Takatsuka H,Higaki T,Umeda M Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]