PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235249.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 174aa MW: 19860.8 Da PI: 6.5095

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235249.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	55	97	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r RR ri ++++ Lr+llP + + + ++ ++++Ik L XP_008235249.1 55 VTDRSRRIRIAEKLDALRQLLPIS-----TEGGRSFVVDDVIDHIKFL 97 6789******************97.....2222345556666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.239	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-8	53	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-5	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.58E-5	58	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MHNINFTPSI ILQGQIIYNG DKKDSVSQVD PRARSALPDF HSQPHHHIST QRAAVTDRSR 60 RIRIAEKLDA LRQLLPISTE GGRSFVVDDV IDHIKFLQLQ MKDLCRSRLG GETITEPIIF 120 REGYGHYFCH QNMLNEPLEE MMGKLLETNP MAASQLLENK DLLLLPMDYS EPLA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235249.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235249.1	1e-127	PREDICTED: transcription factor UNE12-like
Refseq	XP_008235250.1	1e-127	PREDICTED: transcription factor UNE12-like
Refseq	XP_008235251.1	1e-127	PREDICTED: transcription factor UNE12-like
Refseq	XP_016650643.1	1e-127	PREDICTED: transcription factor UNE12-like
TrEMBL	A0A251N2R7	1e-95	A0A251N2R7_PRUPE; Uncharacterized protein
TrEMBL	A0A251N4X5	1e-95	A0A251N4X5_PRUPE; Uncharacterized protein
STRING	XP_008235249.1	1e-127	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-17	LJRHL1-like 1