PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235331.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 298aa    MW: 31703.9 Da    PI: 6.3728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235331.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09147191554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + ++Y+k L
  XP_008235331.1 147 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 191
                     99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-15140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6147191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MANNPSEAPA DDFLEQILGL PNFASADANL AGSDGGLTGA QVSPSPMMLQ LNSGDGSGHI  60
SAVGGGYRGP VFPLGLSLEQ GKAGFLKPEE ASGSGKRFRD DMVDSRGSSV KNVFHGQPIS  120
NSVAAAPHPP AMRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP SVNKTDRAAM  180
LDEIMDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDIPLSS VEEEGGEGGR NQPAWDKWSN  240
DGTERQVAKL MEENVGAAMQ FLQSKALCIM PISLASAIYH TQPPDTSSVV KPEMNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235331.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894100.0KP689410.1 Prunus pseudocerasus isolate Unigene16804 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235331.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-135UNE12_ARATH; Transcription factor UNE12
TrEMBLM5W8A10.0M5W8A1_PRUPE; Uncharacterized protein
STRINGXP_008235331.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]