PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235356.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 461aa    MW: 50787.9 Da    PI: 8.9101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235356.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0580102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_008235356.1  80 FVCEICNKGFQRDQNLQLHRRGH 102
                     89*******************88 PP
2zf-C2H211.70.00081157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_008235356.1 157 WKCDKCSKIYAVQSDWKAHSKTC 179
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-679102No hitNo description
Gene3DG3DSA:3.30.160.601.5E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PfamPF121717.2E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-6152177No hitNo description
SMARTSM00355180157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD HQHPYPTNKI KMKRSLPGNP  60
DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKDQIRKR  120
AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESAKLSASQL TATNTTTNPN IMTPQISLFP  240
FQNPPPPFTT ISLTPWDPPH HQNPNPNLNH HLIKTESHHH NHFPKTQSHK GLLTSPFQNL  300
HLSTHPSSKP STSSAHLSAT ALLQKAATVG SASSAAASAG QQAQSAGLTV GEFGTATHMN  360
MISTDYLGEF TSGDLATWQK TDRLTRDFLG LTGDGTGNHN VGAVNVVKDM LTYAGGVEFH  420
QQQQQPYDQA LRGHNNSLLL KPQGFGFAET TAAASETWGD C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35153217367Zinc finger protein JACKDAW
5b3h_F2e-35153217367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235356.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-133IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLM5VM230.0M5VM23_PRUPE; Uncharacterized protein
STRINGXP_008235356.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-105indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]