PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235541.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 215aa    MW: 23763.7 Da    PI: 10.5535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235541.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-114692354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++h+  ErrRR riN  +++Lr++lP++      K++Ka++L ++v+ +++L
  XP_008235541.1 46 KKHSDSERRRRMRINGQYATLRTVLPNL-----IKMDKASVLAETVRQVREL 92
                    679************************9.....6************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1235101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2724392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-84692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-104697No hitNo description
Gene3DG3DSA:4.10.280.104.0E-124796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-104998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.89E-6133199No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-6135180No hitNo description
CDDcd048735.74E-6136199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MLSIPSYYPK QISFPKGQGV FPVNTIYSKS FFKPKSKAET KVIAAKKHSD SERRRRMRIN  60
GQYATLRTVL PNLIKMDKAS VLAETVRQVR ELKRAVAEVE AACRHGDSDE CVLPGGVDKL  120
SLEQCDGEQE GLVKATLSCD DRPGLISDMT RALGSVKGRV VRAEMVIVGG RSKNVLWIQG  180
LGDGKEGMVA LRRALKVVID RPIFAGLSKR FHLPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235541.11e-157PREDICTED: transcription factor bHLH131-like
TrEMBLM5WLM71e-152M5WLM7_PRUPE; Uncharacterized protein
STRINGXP_008235541.11e-157(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-42bHLH family protein