PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235718.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 215aa    MW: 24169.2 Da    PI: 6.6117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235718.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000243456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  XP_008235718.1 34 YECVFCKRGFTTAQALGGHMNIH 56
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-63261No hitNo description
Gene3DG3DSA:3.30.160.602.1E-43260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4273461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEHHDHQVSK SSSTDEEADQ RSDANDGVGT GRSYECVFCK RGFTTAQALG GHMNIHRRER  60
APKTRPSSAP NLSSSISKSV DDHNHPGLRS YREIQSYPPH YSTAPDHDQV VVDHHVNYRT  120
FMPAPTGSWV VRPSPHANYV SEEDLCARNY IPRHRNLLTD DHRDWRSGSS LSLGIGRPSH  180
DLDNNKDRVA NGAGSDEELD LELRLGHDPL YNIKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184731e-41HQ418473.1 Malus x domestica transcriptional regulator superman (SUP9a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235718.11e-159PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLM5VK161e-155M5VK16_PRUPE; Uncharacterized protein
STRINGXP_008235718.11e-159(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein