PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235784.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 316aa MW: 36245.7 Da PI: 8.1967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235784.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.9	7.1e-23	48	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+e+GFsvr +skks ++ge++++++vC+keg+ ++e++ +r+r + r +Cka+l+v k+k g ++vt +e+ H+H+++ XP_008235784.1 48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--VVKRRRGVGRESCKARLVVVKSKYGGYVVTIFEEAHSHPMT 134 6***************9999.8889************9988..77888999****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-20	48	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEANNGILLP METDPETNPS VSIFYPQVIG EFTPFQGQQF ETLEEVYDFY NQYAREAGFS 60 VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGVVKRRRG VGRESCKARL VVVKSKYGGY 120 VVTIFEEAHS HPMTTPRRRH LLKSHRRISG VNQLVAQQLI SVNVSTHQQY DILATQAGGI 180 ENVGFTQQDM YNSNRDRRMK IKGHDGEMLF DHFMNEQEKN PGFIFKVETN IEHKITRCFW 240 ADAISRQSYK FYGDAVIFDT TYNTNRYCMI FAPIMGVNKY GQTHDKRNCP MLQKSSSIVD 300 KDAFNGMDNS SSSQDD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235784.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235784.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5WUA3	1e-109	M5WUA3_PRUPE; Uncharacterized protein
STRING	XP_008235784.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-38	FAR1-related sequence 5