PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235883.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 218aa MW: 25264.7 Da PI: 5.2556

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235883.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.5e-27	51	139	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA++vGF +r+++ ++s+ +++i +r++ C+k+g+ + +++ + rr+r++tr gCka++ vk +k+gkw+vt+++++H+H+l XP_008235883.1 51 DFYSEYARHVGFIMRIDQCRRSDVDKRILSRRLSCNKQGRYVKPRDQVRPVRRPRPSTREGCKAMMLVKVNKSGKWVVTRVVKDHTHQL 139 6*************************************999999999*************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-24	51	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MENGRPRPWL DLLSTDPKPT GAPETSAERD LNAVAEPYVG MEFDSEDAAK DFYSEYARHV 60 GFIMRIDQCR RSDVDKRILS RRLSCNKQGR YVKPRDQVRP VRRPRPSTRE GCKAMMLVKV 120 NKSGKWVVTR VVKDHTHQLI VSSGISMDER DMKIEQLTME LEREDQLCEL YHGLLLTLLD 180 NIEEQTELIS MKVSGIVNDV REFETEVERL PQNELDDN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235883.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235883.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 1-like
TrEMBL	A0A314UF00	1e-151	A0A314UF00_PRUYE; Protein FAR1-RELATED SEQUENCE 1
STRING	XP_008235883.1	1e-161	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	5e-50	FAR1 family protein