PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235884.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 255aa MW: 29666.5 Da PI: 6.1109

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235884.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8.5e-26	80	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++ GF+vr++++++s++n+ ++ ++fvCs+eg+r+++ +++ + ++tr gC a+l+v +++ +kw+vtk+++eHnH+l+ XP_008235884.1 80 DFYIAYGRHSGFTVRIHHNRRSRMNNMVIGQDFVCSREGFRDKKYVCrEDRVLPPPPVTREGCAAMLRVALRDGEKWVVTKFVKEHNHTLM 170 6***************************************998772333344899*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-23	80	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MESKANNISF NSDESERCLE FESCDEHLLI DDDELPKDTD LCSFEVDKII QQPNASLPLM 60 GNAVEPYIGM GFKSRDDARD FYIAYGRHSG FTVRIHHNRR SRMNNMVIGQ DFVCSREGFR 120 DKKYVCREDR VLPPPPVTRE GCAAMLRVAL RDGEKWVVTK FVKEHNHTLM APSKVPWRGF 180 GKNLISEDEK DQKIRDLTIE LSNERQRCKR RCAAYQEQIS MLLKDIQEHS DHLSTRVQDI 240 VRNIRELENE QCVDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	RQRCKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235884.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235884.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5VGR9	0.0	M5VGR9_PRUPE; Uncharacterized protein
STRING	XP_008235884.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-42	FAR1 family protein