PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236198.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 336aa    MW: 37377.7 Da    PI: 7.1824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236198.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-0959106354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  XP_008236198.1  59 IQKADREKLRRDRLNEQFLELGNVLDPD----RPKNDKATILADTIQVLKDL 106
                     56789*******************9997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.94456106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1256124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-757110No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1157128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-759106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-762112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGQQLKHEGF IQSAPPPFPS AIEFPQPPPD SRTPSGRSQP DSSQRPEGET KDCLTARKIQ  60
KADREKLRRD RLNEQFLELG NVLDPDRPKN DKATILADTI QVLKDLTSEV DKLKANCASL  120
TEESRELTHE KNDLREEKAS LKSDIENLNA QYQQRLRAMF PWGAMDHSVV MAPPSYPYPM  180
PMPIPPGPIP MHPHMQPYHY FPNQNPGVIP NPCSTFVPYV TPNTLVEQQS TQYVSPVVHP  240
GSRSRVSGKQ DSRNKLSGES KIDRSEDSND VTTELELKTP GSMTDQDLSS VRRKSQKSAR  300
KEIKVTEGSS SSRCSSSRSV QDSSSNSVVG GTKADD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236198.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236198.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT233e-97BH121_ARATH; Transcription factor bHLH121
TrEMBLM5VL490.0M5VL49_PRUPE; Uncharacterized protein
STRINGXP_008236198.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-89bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]