PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236390.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 260aa    MW: 28318.4 Da    PI: 6.5054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236390.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000531521891254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  XP_008236390.1 152 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 189
                     77788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.925140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.21E-5151194No hitNo description
Gene3DG3DSA:4.10.280.102.2E-7151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAENDGLEGD HLAVTEGTSF SQLLFAADEV CGLGVDDETF NYTHSSAYST QIKPPKMLCF  60
GNYDHNHGDG LEIGFSETAK KSGVTCSDSS SVYSTSNTSI NALPKSNNKR RNGLGQESVQ  120
CASTISTTMV ASQRTSKKTK SENHTSTGNA KRKEKLGERI AALQQLVSPF GKTDTASVLH  180
EAMGYIRFLH DQVQVLCSPY LQRLPTLPDG EMEEARKDLR SRGLCLAPVE YTMHVTNNNG  240
ADFWSPAMAN NNNNVSSTKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236390.10.0PREDICTED: transcription factor bHLH113
TrEMBLA0A314XJ721e-175A0A314XJ72_PRUYE; Transcription factor bHLH113
STRINGXP_008236390.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-46bHLH family protein