PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236405.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HB-PHD
Protein Properties Length: 1040aa    MW: 114240 Da    PI: 4.6538
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236405.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox406.6e-13875918952
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     +  +++L + F++n+yp+++++e LA++lgL  +qV+ WF N R
  XP_008236405.1 875 EAVTQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 918
                     667899************************************99 PP
2PHD38.23.3e-13496551151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg+     +++++lCdg C++ fH+ Cl+++l se++p +   wlC+ C++k
  XP_008236405.1 496 FCAKCGSkdVSLDNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 551
                     699***964444********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.4E-13486554IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.7E-13492551IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.119494551IPR019787Zinc finger, PHD-finger
PfamPF006281.4E-10496551IPR019787Zinc finger, PHD-finger
SMARTSM002491.5E-9496549IPR001965Zinc finger, PHD-type
CDDcd155044.37E-27496548No hitNo description
PROSITE patternPS013590497548IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.3E-14841919IPR009057Homeodomain-like
SuperFamilySSF466894.02E-11852919IPR009057Homeodomain-like
PROSITE profilePS5007113.183864924IPR001356Homeobox domain
SMARTSM003891.3E-9866928IPR001356Homeobox domain
CDDcd000862.94E-10867918No hitNo description
PfamPF000462.1E-10875918IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MADAAQLEIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC  60
KASNNPEEQS QSFSENLTEN SHVENLGLPA EDVNKSSQSD AQNVTKNSLT EQLEMPHEDP  120
DVNNQTDKTS CSGQISLEQT NDSGFGTSSS EPAEEKHPSG SFCVQNELLQ TIMPLPICSG  180
SEQLQPISEN VNMASLNDQA GLPPEDVSKT CQSEKISCSH QITLQQINEF GSGSVPSEPA  240
KQKYELDSVP AQNDEVKTSK AVSSSIVFEQ PGPSIEAMTE DSPIGHSEPP PEDAIKSLSD  300
KEMEPLPEDV TQNSSLQQSE TPSKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL  360
RSRTGEKEKP KDLKLSNNVA TLESSNSIAN VSNGEEKKRK KRKNRRDNRA IADEFSRIRT  420
HXEKSLIDAY SGEGWKGSSL EKLKPEKELQ RATSEILRRK LKIRDLFQRL ESLCAEGMFP  480
ESLFDSEGQI DSEDIFCAKC GSKDVSLDND IILCDGACDR GFHQFCLEPP LLSEDIPPDD  540
EGWLCPGCDC KVDCIDLLND SQGTDLSVTD SWEKVFPEAA AAASAGENQD NHGLPSDDSD  600
DNDYDPDGPE TDNKVEGEES SSDESEYASA SDGLETPKSN DEQYLGLPSE DSEDDDYNPY  660
APDVNEDVKQ ESSSSDFTSD SEDLGAALDD NIMSSEDVEG SKSTSLDDSK PHRGSGERSS  720
RRGQKKHSLK DELISLLESG PGQGESASLS GKRHIERLDY KRLHDEAYGN VPTDSSDDED  780
WNDIAIQRKR KKGTGQVANR SPNGKTSNIK NGVITKDIKP DVDENENTPR RKPHRKSNVE  840
DTSNFSNKSP KGSTKSGSTS GRAGSSRSTY SRLGEAVTQR LCKSFKENHY PDRSMKESLA  900
RELGLMAKQV SKWFENARHC LKVGVDKSAS ENCALSPQTN RKQLEQGDAI VGDSDHNGAQ  960
NKELHRTDDP MIGCCSRDVK DSELVSPGSS RSKLSTPNNR KRKRRSDDPD PKTGTPAPPA  1020
EPETNRKPSR VMTRRRKSVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396402KKRKKRK
2397405KRKKRKNRR
3787791RKRKK
49991004RKRKRR
510321037TRRRKS
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236405.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox protein HAT3.1
SwissprotQ049961e-124HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A251MXN70.0A0A251MXN7_PRUPE; Uncharacterized protein
STRINGXP_008236405.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]