PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008236443.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 220aa MW: 24010.1 Da PI: 8.2189

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008236443.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.9	3.6e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++++q+ XP_008236443.1 2 SCNGCRVLRKGCSDNCMLRQCLqwiedPKAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLFFEAVGRTINPVNGATGLLLSGKWEVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_008236443.1 97 AVETVLR 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.551	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCMLR QCLQWIEDPK AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PALFQSLFFE AVGRTINPVN GATGLLLSGK WEVCQAAVET VLRGGTLEPL PEYTRNDHQN 120 CVHDHRIRLQ RQSTKKKRSS NLAFDDTDDH ALANCQLPDL DLCLTAGGLT SRTKRGDCRA 180 GTPSSAEESE TTTLGSSSSS ADHCSGNNLK GTTKLLRLFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008236443.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008236443.1	1e-163	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SN23	3e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A314Z8E0	1e-151	A0A314Z8E0_PRUYE; LOB domain-containing protein 38
STRING	XP_008236443.1	1e-162	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-64	LOB domain-containing protein 38