PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236843.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family DBB
Protein Properties Length: 208aa    MW: 22910 Da    PI: 6.012
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236843.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.8e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e   ++ fC  ++  lC++C ++ H
  XP_008236843.1  4 LCDVCEGAAAIVFCAADEAALCRSCDEKVH 33
                    7******99******************998 PP
2zf-B_box27.56.6e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_008236843.1 52 DVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHR 92
                    5789**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
PfamPF006431.3E-5341IPR000315B-box-type zinc finger
CDDcd000218.06E-6345No hitNo description
PROSITE profilePS501199.035196IPR000315B-box-type zinc finger
SMARTSM003365.7E-105196IPR000315B-box-type zinc finger
PfamPF006436.6E-75292IPR000315B-box-type zinc finger
CDDcd000214.04E-75693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRTLCDVCEG AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLASP SDVPCCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HRRYLLFRQR VEFPGDKPGR SEELGLQPLD  120
QKEVRKDHIQ PPSLSIRENQ QNCSASPVAV LDNNIVGDYK MDNRLIDLNT RPQRMNGQAS  180
TSPEQGLDVQ NGVNDESASV VPVGSFKR
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236843.11e-153PREDICTED: B-box zinc finger protein 18-like isoform X1
RefseqXP_021806305.11e-153B-box zinc finger protein 18-like isoform X1
RefseqXP_021806306.11e-153B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM52e-80BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A314URI91e-151A0A314URI9_PRUYE; B-box zinc finger protein 18-like isoform X1
STRINGXP_008236843.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-82DBB family protein