PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236907.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 106aa    MW: 11957.4 Da    PI: 9.3706
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236907.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-091054344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W  +a+ +g ++t++++k ++
   XP_008236907.1 10 SWTPKQNKLFERALALYDKDtpeRWQNVAKAVGGNKTAEEVKRHY 54
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.458358IPR017877Myb-like domain
SMARTSM007171.3E-7760IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-12966IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-41064IPR009057Homeodomain-like
CDDcd001674.14E-51054No hitNo description
PfamPF002493.3E-71054IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MASLQKHNSS WTPKQNKLFE RALALYDKDT PERWQNVAKA VGGNKTAEEV KRHYDILLED  60
LRQIESGHVP IPNYKSSYGG GGGGRGSSSN INVDEEERLL KYLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-301106193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236907.11e-73PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A251MVM57e-59A0A251MVM5_PRUPE; Uncharacterized protein
STRINGXP_008236907.14e-73(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-35RAD-like 6