PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236952.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 679aa    MW: 74687.8 Da    PI: 6.2085
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236952.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094214581954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  XP_008236952.1 421 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 458
                     664459******************************88 PP
2BELL129.11.5e-41283354172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e+qelq+k +kLls+l+eVd+rYk+y++q+q+v+ssF+++ag+g+akpYt++Al++iSrhFrcL+dai++qi
  XP_008236952.1 283 EKQELQSKLTKLLSMLDEVDRRYKHYYHQMQIVVSSFDVIAGCGAAKPYTAVALQTISRHFRCLRDAITGQI 354
                     689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.5E-63208352IPR006563POX domain
PfamPF075263.4E-50214351IPR006563POX domain
PROSITE profilePS5007112.163399462IPR001356Homeobox domain
SMARTSM003891.0E-9402466IPR001356Homeobox domain
CDDcd000864.45E-13402463No hitNo description
SuperFamilySSF466892.57E-17403469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-29405468IPR009057Homeodomain-like
PfamPF059204.6E-18419458IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSTYYTGSNN QKDATPMLYL REPLPSSYPE APVLPGNMMM YMNSGSYSDA LAGSSQQQNN  60
CIDVVSSVGA SDNNSQQQDV LSHLGGSRVG EQGFSPWREG RNEMLVTHPM GGSAAILHGG  120
QNLQGQGLSL SLSTQIPSGM QMPSIPYRNP NMGFASFLSP NPSISSEGDC RNGAFRDEQP  180
RNVEYLQSGF PGGNPDSSKG DLSPYGMSSI ARAIPNNKYL KAAQQLLDEV VNVQKALKQH  240
DREKNQSTHE HRDDGSKNEL ESGVSSNPQD TASNSQCELS HAEKQELQSK LTKLLSMLDE  300
VDRRYKHYYH QMQIVVSSFD VIAGCGAAKP YTAVALQTIS RHFRCLRDAI TGQIRATRKS  360
LGEEGASGSI KGVGISRLRY VDQQLRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL  420
FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDAEMDSN  480
SSSENAPQTK KSDMRTMEDG VEDMQPSASS TCTERCSTGQ FMDSKSDHFH DVEMAGSTGS  540
ASFQNGTRRE AEAQYGLVKL REGQRAGMDD CSLFSDPNVH SDRSSERFME AADAYHMPEL  600
GRFGSGSGVS LTLGLQHCDG GSLPISTGTH HSFVAMRGDD LYNPAASSVG SETADFECMD  660
SGNQQHRFGS SHLLRDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17408465158Homeobox protein Meis1
4xrs_B9e-17408465158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236952.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A251MVD10.0A0A251MVD1_PRUPE; Uncharacterized protein
STRINGXP_008236952.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-121BEL1-like homeodomain 6