PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008236969.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

SRS

Protein Properties

Length: 231aa MW: 25724.9 Da PI: 8.9803

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008236969.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	198.4	2.3e-61	13	156	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnqakk+C+++RCRtCCks+gf+C+thvkstWvp+++rr++q aaa ++ + ++++ +++++ + +++ + +s++++ XP_008236969.1 13 ASRCQDCGNQAKKECVYMRCRTCCKSKGFHCQTHVKSTWVPVYRRRQQQ-LPAAAIPQQHLQLHHEQGHHHQN----PKRPAEHLTNPSSSTRL- 101 569***************************************99854.44444444434344433333333....33334444445554454. PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+ev+s+a f+cvrvssv+d ++ aYqt+v igGhvfkGiLydqG+++ XP_008236969.1 102 DQEVNFPAEVNSMATFKCVRVSSVEDMVDQHAYQTSVVIGGHVFKGILYDQGPDH 156 44556**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.6E-59	14	155	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-28	16	57	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.3E-24	107	154	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVKRGGEGGV IMASRCQDCG NQAKKECVYM RCRTCCKSKG FHCQTHVKST WVPVYRRRQQ 60 QLPAAAIPQQ HLQLHHEQGH HHQNPKRPAE HLTNPSSSTR LDQEVNFPAE VNSMATFKCV 120 RVSSVEDMVD QHAYQTSVVI GGHVFKGILY DQGPDHHHQN CYTTVGQSSS SHHVLLNRKT 180 SNSINAAANT ASTSSAPDPA DRVPQHHPPS SYPLIPFNAF MPGTQFFINP K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008236969.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008236969.1	1e-175	PREDICTED: protein SHI RELATED SEQUENCE 3
Swissprot	Q9SD40	2e-52	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A251MV94	1e-162	A0A251MV94_PRUPE; Uncharacterized protein
STRING	XP_008236969.1	1e-174	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	4e-44	SHI-related sequence3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]