PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237143.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 24945.6 Da    PI: 8.7449
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237143.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.5e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s
  XP_008237143.1  9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEFTS 59
                    68***********************************************75 PP
2K-box47.48.2e-17901711899
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +  +a L kei +  +e+R+l Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i  l+ k  +l +enk+L++ ++
  XP_008237143.1  90 SSTSAALSKEIAEKTHELRKLRGEELQELNMKELQELEKLLGSGLRRVRDAKCEIVLKEITSLKWKGSQLMQENKRLKQVMM 171
                     5667889999999999*************************************************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-27323IPR002100Transcription factor, MADS-box
CDDcd002652.69E-38375No hitNo description
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.44686177IPR002487Transcription factor, K-box
PfamPF014868.6E-1591168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEFTSS  60
SVQQVIERHH LLSSDFDKLN HPSLELQLES STSAALSKEI AEKTHELRKL RGEELQELNM  120
KELQELEKLL GSGLRRVRDA KCEIVLKEIT SLKWKGSQLM QENKRLKQVM MENRQVQTLE  180
LEQGQSSEPI GDFIHSDPSQ DHDSSDISLK LGLAFPSGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19169169MEF2C
5f28_B7e-19169169MEF2C
5f28_C7e-19169169MEF2C
5f28_D7e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475480.0KP347548.1 Prunus pseudocerasus SVP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237143.11e-157PREDICTED: MADS-box protein SVP-like isoform X3
SwissprotQ9FUY64e-75JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A140FAH41e-145A0A140FAH4_PRUMU; SVP-like protein 2
STRINGXP_008237141.11e-154(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]