PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237144.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 23957.3 Da    PI: 8.2654
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237144.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s
  XP_008237144.1  9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEFTS 59
                    68***********************************************75 PP
2K-box355.8e-13971691991
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                       +a L kei +  +e+R+l Ge+L++L++keLq+Le+ L ++l+++R+ K   l+++ ++l++ + e+++ +
  XP_008237144.1  97 STSAALSKEIAEKTHELRKLRGEELQELNMKELQELEKLLGSGLRRVRDAKGSQLMQENKRLKQVMMENRQVQ 169
                     556788999999999***********************************************99998887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30273IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-27323IPR002100Transcription factor, MADS-box
CDDcd002651.33E-38375No hitNo description
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.66192179IPR002487Transcription factor, K-box
PfamPF014862.9E-997164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEFTSS  60
SVQQVIERHH LLSSDFDKLN HPSLELQSFC MSQLESSTSA ALSKEIAEKT HELRKLRGEE  120
LQELNMKELQ ELEKLLGSGL RRVRDAKGSQ LMQENKRLKQ VMMENRQVQT LELEQGQSSE  180
PIGDFIHSDP SQDHDSSDIS LKLGLAFPSG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19169169MEF2C
5f28_B6e-19169169MEF2C
5f28_C6e-19169169MEF2C
5f28_D6e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8038460.0KT803846.1 Prunus mume SVP-like protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237144.11e-151PREDICTED: MADS-box protein JOINTLESS-like isoform X5
SwissprotQ9FUY62e-67JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A140FAH41e-137A0A140FAH4_PRUMU; SVP-like protein 2
STRINGXP_008237141.11e-147(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]