PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008237173.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 824aa MW: 90934 Da PI: 5.0174

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237173.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	371	394	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+++ +H+ + H XP_008237173.1 371 FECHKCSMTFGEKDSYLQHLLSfH 394 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.890.10	5.7E-4	241	294	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	2.62E-6	244	295	IPR016177	DNA-binding domain
PROSITE profile	PS50157	8.767	371	399	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.27	371	394	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	373	394	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.829	418	445	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	418	440	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	420	440	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MATVDSLTHI DITTLSQSEL HALSLCSSSS SAFNLFGAQD LVVPKIDRSV FNESAGSRRQ 60 TYSRPRRSQS DASTGHRRRV AGLHATPKLS PVPPDDPERN ENHAIIAHLK NFISQDPKFD 120 QIDFEAAHTA SFPVLLGPNH ELRSGIVGFE GREDEGVKKR KRGRKPKVKV LSMEGEGYVG 180 MEMVNKNGAA VDVSGLANVE DPFGEELRRR TVGLETEEQL LGFMRELGGQ WGSRRKKRKI 240 VDANEFGDAL PVGWKLLLGL KRKEGRAWIY CRRFISPTGQ QFLSCKEVSS FLHSFFGFNN 300 ARQPDGRGGE NLQEECIMTT ENQHSDKDGG RRQYVNSSSA LVVSTISNEH EKEVSLSGME 360 NLAEVQIHDL FECHKCSMTF GEKDSYLQHL LSFHQRTTRR YRLGSTVGDG VIIKDGKYEC 420 QFCHKVFLER RRYNGHVGIH VRNYVRRVEE SPGPTTVQKR IESPSGEGFP SRISKMDALI 480 EIAQNSILET STAGPNNESK CGPAANSHQE MNIDSPLSEP DLEGSMIDRT ASDQHDSEHT 540 ITDGSMEEAD DPMEVVDVKM DSGMNTTSIE KNGKPSESSL EKDGLVFTTD ELEKSGTNQD 600 GASQCLIHAS SNDKIISEVV GNENLNFTST LEHPNAVELS NNKNSEPAVE LGSSNDHGPA 660 DDTLIEPVRQ ANEENEIQSG ISDSSISLVQ PLVCFPTSNA ISDKGEQHVS SVGQRHNHET 720 GFEELRLDEI EPLKYGFAGG QESLTMQEVP MDLTNNAEME RAFGSSVQFE QEEVMLSMAA 780 SHQLTCVWCG VEFNHEAADS EIQADSVGFM CPACKAKISG PLNV

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MATVDSLTHI DITTLSQSEL HALSLCSSSS SAFNLFGAQD LVVPKIDRSV FNESAGSRRQ  60
TYSRPRRSQS DASTGHRRRV AGLHATPKLS PVPPDDPERN ENHAIIAHLK NFISQDPKFD  120
QIDFEAAHTA SFPVLLGPNH ELRSGIVGFE GREDEGVKKR KRGRKPKVKV LSMEGEGYVG  180
MEMVNKNGAA VDVSGLANVE DPFGEELRRR TVGLETEEQL LGFMRELGGQ WGSRRKKRKI  240
VDANEFGDAL PVGWKLLLGL KRKEGRAWIY CRRFISPTGQ QFLSCKEVSS FLHSFFGFNN  300
ARQPDGRGGE NLQEECIMTT ENQHSDKDGG RRQYVNSSSA LVVSTISNEH EKEVSLSGME  360
NLAEVQIHDL FECHKCSMTF GEKDSYLQHL LSFHQRTTRR YRLGSTVGDG VIIKDGKYEC  420
QFCHKVFLER RRYNGHVGIH VRNYVRRVEE SPGPTTVQKR IESPSGEGFP SRISKMDALI  480
EIAQNSILET STAGPNNESK CGPAANSHQE MNIDSPLSEP DLEGSMIDRT ASDQHDSEHT  540
ITDGSMEEAD DPMEVVDVKM DSGMNTTSIE KNGKPSESSL EKDGLVFTTD ELEKSGTNQD  600
GASQCLIHAS SNDKIISEVV GNENLNFTST LEHPNAVELS NNKNSEPAVE LGSSNDHGPA  660
DDTLIEPVRQ ANEENEIQSG ISDSSISLVQ PLVCFPTSNA ISDKGEQHVS SVGQRHNHET  720
GFEELRLDEI EPLKYGFAGG QESLTMQEVP MDLTNNAEME RAFGSSVQFE QEEVMLSMAA  780
SHQLTCVWCG VEFNHEAADS EIQADSVGFM CPACKAKISG PLNV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237173.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237173.1	0.0	PREDICTED: uncharacterized protein LOC103335917 isoform X1
TrEMBL	M5VIK5	0.0	M5VIK5_PRUPE; Uncharacterized protein
STRING	XP_008237173.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19